PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000716551
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 383aa    MW: 41283.9 Da    PI: 9.7587
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000716551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.2e-31273330359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D+y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp ++++tYegeH+h 
  MDP0000716551 273 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 330
                    9************************9888****************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.5E-18216269IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.3E-32259330IPR003657WRKY domain
PROSITE profilePS5081130.446266332IPR003657WRKY domain
SuperFamilySSF1182903.92E-26269330IPR003657WRKY domain
SMARTSM007742.2E-37271331IPR003657WRKY domain
PfamPF031061.5E-26273329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTVELMXFPK MEDQKAIQEA ASQGLQSMEH LIRFLSHQQQ HPNNQSARLD CTDITDHTVS  60
KFKKVISLLN RTGHARFRRG PAQPVQPVHF SSSHPSPSQT LSLAPALNLT PTPAPVPVTA  120
PAVVQQATIE SSFGQSQPHS MTLDFTRPNA FASNPKSAEI EFAKDNFSVS SGSSFMSSAI  180
TGDGSVSNGK LGSSIFLAPA PAVSGAKPPL STAPFKKXCH EHDHSDDTSC KFSASGSASX  240
SGKCHCSKRR KNRVKKTIRV PAISSKIADI PPDEYSWRKY GQKPIKGSPY PRGYYKCSTV  300
RGCPARKHVE RAPDDPAMLI VTYEGEHRHA PESVGLVYES TSRSSKGGGS GFLVSALIYR  360
LGRFLLCNLG FDGRCSTDAG VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21259329271WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.164990.0bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ9960680.0KJ996068.1 Pyrus x bretschneideri WRKY domain class transcription factor (WRKY16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008347647.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV151e-135WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLD9ZJF50.0D9ZJF5_MALDO; WRKY domain class transcription factor
STRINGVIT_04s0069g00920.t011e-140(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.21e-114WRKY DNA-binding protein 11